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    LOC4346610 transcription factor TGAL7-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4346610, updated on 10-Oct-2024

    Summary

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    Gene symbol
    LOC4346610
    Gene description
    transcription factor TGAL7-like
    Locus tag
    OSNPB_090280500
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    TGAL7; OsbZIP70
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    Genomic context

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    See LOC4346610 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 9 NC_089043.1 (10246573..10258307)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 9 NC_029264.1 (5918021..5929773)

    Chromosome 9 - NC_089043.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC136351658 Neighboring gene dehydrogenase FPY6 Neighboring gene meiotic nuclear division protein 1 homolog Neighboring gene uncharacterized LOC9267094

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    transcription factor TGAL7
    Names
    LOC_Os09g10840
    Os09g0280500
    P0651G05.17
    Transcription factor TGAL7
    bZIP transcription factor 70
    putative bZIP transcription factor

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001422715.1 → NP_001409644.1  transcription factor TGAL7

      Status: VALIDATED

      Source sequence(s)
      AK106988, CI686612
      UniProtKB/Swiss-Prot
      Q6H434

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089043.1 Reference ASM3414082v1 Primary Assembly

      Range
      10246573..10258307
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015795716.3 → XP_015651202.1  transcription factor TGAL7 isoform X1

      UniProtKB/TrEMBL
      A2YZA8, A3BWV0
      Conserved Domains (2) summary
      pfam14144
      Location:272 → 345
      DOG1; Seed dormancy control
      cl21462
      Location:189 → 240
      bZIP; Basic leucine zipper (bZIP) domain of bZIP transcription factors: a DNA-binding and dimerization domain

    2. XM_066303869.1 → XP_066159966.1  transcription factor TGAL7 isoform X2

    3. XM_066303870.1 → XP_066159967.1  transcription factor TGAL7 isoform X3

    4. XM_026020420.2 → XP_025876205.1  transcription factor TGAL7 isoform X4

      UniProtKB/TrEMBL
      A2YZA8
      Conserved Domains (3) summary
      cd14686
      Location:110 → 160
      bZIP; coiled coil [structural motif]
      pfam14144
      Location:192 → 266
      DOG1; Seed dormancy control
      cl21462
      Location:109 → 160
      bZIP; Basic leucine zipper (bZIP) domain of bZIP transcription factors: a DNA-binding and dimerization domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q6H434.1 GenPept UniProtKB/Swiss-Prot:Q6H434

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