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    LOC4337152 phenolic glucoside malonyltransferase 1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4337152, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4337152
    Gene description
    phenolic glucoside malonyltransferase 1
    Locus tag
    OSNPB_040638100
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in roots before flowering (RPKM 5.4), leaves before flowering (RPKM 1.7) and 4 other tissues See more
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    Genomic context

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    See LOC4337152 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (32955826..32960002, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (32448453..32450598, complement)

    Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene anthocyanidin 3-O-glucoside 6''-O-acyltransferase-like Neighboring gene phenolic glucoside malonyltransferase 1-like Neighboring gene malonyl-CoA:anthocyanidin 5-O-glucoside-6''-O-malonyltransferase-like Neighboring gene uncharacterized LOC107276323 Neighboring gene uncharacterized LOC4337154

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    phenolic glucoside malonyltransferase 1
    Names
    Os04g0638100

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

      Range
      32955826..32960002 complement
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015778445.3 → XP_015633931.1  phenolic glucoside malonyltransferase 1

      UniProtKB/TrEMBL
      A0A0N7KJS5, A0A8J8Y4W6, B8AV67, B9FCR7, Q0J9P7, Q7X886
      Conserved Domains (2) summary
      pfam02458
      Location:37 → 437
      Transferase; Transferase family
      cl23789
      Location:39 → 442
      PLN02481; Omega-hydroxypalmitate O-feruloyl transferase
    Nucleotide Protein
    Heading Accession and Version

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