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    LOC4352332 ABC transporter G family member 50-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4352332, updated on 10-Oct-2024

    Summary

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    Gene symbol
    LOC4352332
    Gene description
    ABC transporter G family member 50-like
    Locus tag
    OSNPB_120512700
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    PDR23; ABCG50; OsPDR23; OsABCG50; OsJ_36269
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    Genomic context

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    See LOC4352332 in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    25
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 12 NC_089046.1 (20317521..20329259, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 12 NC_029267.1 (19828478..19840216, complement)

    Chromosome 12 - NC_089046.1Genomic Context describing neighboring genes Neighboring gene probable polyol transporter 6 Neighboring gene putative disease resistance RPP13-like protein 1 Neighboring gene 4-hydroxyphenylacetaldehyde oxime monooxygenase Neighboring gene uncharacterized LOC107278520

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ABC-type transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP hydrolysis activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ABC transporter G family member 50
    Names
    ATP-binding cassette transporter
    LOC_Os12g32820
    Os12g0512750
    Pleiotropic drug resistance protein 23

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001423514.1 → NP_001410443.1  ABC transporter G family member 50 isoform 1

      Status: VALIDATED

      Source sequence(s)
      AK102367
      UniProtKB/TrEMBL
      A0A8E6YLA9

    2. NM_001423515.1 → NP_001410444.1  ABC transporter G family member 50 isoform 2

      Status: VALIDATED

      Source sequence(s)
      AK102367, AP014968
      UniProtKB/Swiss-Prot
      B9GDE5, Q0IN21, Q2QPY9

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089046.1 Reference ASM3414082v1 Primary Assembly

      Range
      20317521..20329259 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_066305991.1 → XP_066162088.1  ABC transporter G family member 50 isoform X4

    2. XM_015762585.3 → XP_015618071.1  ABC transporter G family member 50 isoform X2

      UniProtKB/TrEMBL
      B8BM51
      Conserved Domains (5) summary
      cd03232
      Location:591 → 828
      ABCG_PDR_domain2; Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters
      TIGR00955
      Location:617 → 1185
      3a01204; The Eye Pigment Precursor Transporter (EPP) Family protein
      pfam01061
      Location:923 → 1128
      ABC2_membrane; ABC-2 type transporter
      pfam08370
      Location:492 → 544
      PDR_assoc; Plant PDR ABC transporter associated
      cl21455
      Location:3 → 181
      P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases

    3. XM_066305989.1 → XP_066162086.1  ABC transporter G family member 50 isoform X1

    4. XM_066305990.1 → XP_066162087.1  ABC transporter G family member 50 isoform X3

    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    B9GDE5.2 GenPept UniProtKB/Swiss-Prot:B9GDE5

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