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    LOC4330701 probable serine/threonine-protein kinase SIS8 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4330701, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4330701
    Gene description
    probable serine/threonine-protein kinase SIS8
    Locus tag
    OSNPB_020743500
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1734_E02.18-1; OJ1734_E02.18-2
    Expression
    Ubiquitous expression in roots before flowering (RPKM 23.6), roots after flowering (RPKM 23.0) and 5 other tissues See more
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    Genomic context

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    See LOC4330701 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (31667128..31675233)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (31171917..31180177)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112937899 Neighboring gene auxin efflux carrier component 1a-like Neighboring gene uncharacterized protein At5g39570 Neighboring gene NEP1-interacting protein-like 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein phosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in signal transduction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable serine/threonine-protein kinase SIS8
    Names
    Os02g0743500
    putative MAP kinase kinase kinase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      31667128..31675233
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015770573.3 → XP_015626059.1  probable serine/threonine-protein kinase SIS8

      UniProtKB/TrEMBL
      A0A0P0VPL0, B8AIF3, Q6Z2V3
      Conserved Domains (2) summary
      cd13999
      Location:844 → 1090
      STKc_MAP3K-like; Catalytic domain of Mitogen-Activated Protein Kinase (MAPK) Kinase Kinase-like Serine/Threonine kinases
      pfam14381
      Location:194 → 399
      EDR1; Ethylene-responsive protein kinase Le-CTR1
    Nucleotide Protein
    Heading Accession and Version

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