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    LOC9270292 protein LOW PSII ACCUMULATION 1, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 9270292, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC9270292
    Gene description
    protein LOW PSII ACCUMULATION 1, chloroplastic
    Locus tag
    OSNPB_040507100
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in leaves before flowering (RPKM 6.5), roots after flowering (RPKM 3.2) and 4 other tissues See more
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    Genomic context

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    See LOC9270292 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (25841055..25842915, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (25340349..25342012, complement)

    Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4336344 Neighboring gene DNA mismatch repair protein MSH1, mitochondrial Neighboring gene benzyl alcohol O-benzoyltransferase Neighboring gene CLIP-associated protein

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    protein LOW PSII ACCUMULATION 1, chloroplastic
    Names
    Os04g0507100

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

      Range
      25841055..25842915 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015781191.2 → XP_015636677.1  protein LOW PSII ACCUMULATION 1, chloroplastic isoform X2

      UniProtKB/TrEMBL
      B7EC55
      Conserved Domains (1) summary
      PLN03098
      Location:3 → 250
      LPA1; LOW PSII ACCUMULATION1; Provisional

    2. XM_015781190.3 → XP_015636676.1  protein LOW PSII ACCUMULATION 1, chloroplastic isoform X1

      UniProtKB/TrEMBL
      A0A0P0WC80, A0A5S6RC85, Q01IV5, Q7F951, Q7X6M7
      Conserved Domains (1) summary
      PLN03098
      Location:74 → 321
      LPA1; LOW PSII ACCUMULATION1; Provisional
    Nucleotide Protein
    Heading Accession and Version

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