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    LOC4350779 uncharacterized LOC4350779 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4350779, updated on 13-Jul-2024

    Summary

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    Gene symbol
    LOC4350779
    Gene description
    uncharacterized LOC4350779
    Locus tag
    OSNPB_110579200
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4350779 in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 11 NC_089045.1 (23807561..23812697)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 11 NC_029266.1 (21871781..21876912)

    Chromosome 11 - NC_089045.1Genomic Context describing neighboring genes Neighboring gene F-box protein SKIP23-like Neighboring gene uncharacterized LOC136353957 Neighboring gene disease resistance protein PIK6-NP-like Neighboring gene probable F-box protein At4g22165 Neighboring gene protein SUPPRESSOR OF GENE SILENCING 3 homolog

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in defense response to other organism IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4350779
    Names
    Os11g0579200
    Os11g0579400

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089045.1 Reference ASM3414082v1 Primary Assembly

      Range
      23807561..23812697
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015761824.3 → XP_015617310.1  uncharacterized protein LOC4350779

      UniProtKB/TrEMBL
      A3CCU7, Q2R245
      Conserved Domains (2) summary
      PTZ00121
      Location:405 → 654
      PTZ00121; MAEBL; Provisional
      cd14798
      Location:5 → 131
      RX-CC_like; Coiled-coil domain of the potato virux X resistance protein and similar proteins
    Nucleotide Protein
    Heading Accession and Version

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