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    LOC4350407 uncharacterized LOC4350407 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4350407, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4350407
    Gene description
    uncharacterized LOC4350407
    Locus tag
    OSNPB_110434000
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in roots before flowering (RPKM 7.9), leaves before flowering (RPKM 6.6) and 6 other tissues See more
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    Genomic context

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    See LOC4350407 in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 11 NC_089045.1 (15902873..15906809, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 11 NC_029266.1 (14048527..14052515, complement)

    Chromosome 11 - NC_089045.1Genomic Context describing neighboring genes Neighboring gene protein ALP1-like Neighboring gene large ribosomal subunit protein eL38z/eL38y Neighboring gene uncharacterized LOC136354103 Neighboring gene protein ACCELERATED CELL DEATH 6 Neighboring gene small nucleolar RNA R71

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables acid phosphatase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4350407
    Names
    Os11g0434000
    magnesium-dependent phosphatase 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089045.1 Reference ASM3414082v1 Primary Assembly

      Range
      15902873..15906809 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015762234.3 → XP_015617720.1  uncharacterized protein LOC4350407

      UniProtKB/TrEMBL
      Q0IT00, Q2R5L0
      Conserved Domains (1) summary
      cd07501
      Location:53 → 177
      HAD_MDP-1_like; eukaryotic hypothetical phosphotyrosine phosphatase MDP-1 and related phosphatases, similar to Bacillus cereus phosphonoacetaldehyde hydrolase and Streptomyces FkbH
    Nucleotide Protein
    Heading Accession and Version

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