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    LOC4337994 FACT complex subunit SSRP1-B-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4337994, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4337994
    Gene description
    FACT complex subunit SSRP1-B-like
    Locus tag
    OSNPB_050182600
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    SSRP1-B; OsJ_17363; P0683B12.1
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    Genomic context

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    See LOC4337994 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 5 NC_089039.1 (4984460..4990064)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (4965417..4971024)

    Chromosome 5 - NC_089039.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107276353 Neighboring gene ubiquitin-conjugating enzyme E2 2 Neighboring gene uncharacterized LOC4337995 Neighboring gene glutamine--tRNA ligase

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables histone binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables nucleosome binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of FACT complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    fACT complex subunit SSRP1-B
    Names
    FACT complex subunit SSRP1-B
    Facilitates chromatin transcription complex subunit SSRP1-B
    LOC_Os05g08970
    P0453H11.18
    Recombination signal sequence recognition protein 1-B

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001420230.1 → NP_001407159.1  fACT complex subunit SSRP1-B

      Status: VALIDATED

      Source sequence(s)
      AK102592, AP014961
      UniProtKB/Swiss-Prot
      Q0DK89, Q65WY8
      UniProtKB/TrEMBL
      A2Y138

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089039.1 Reference ASM3414082v1 Primary Assembly

      Range
      4984460..4990064
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q65WY8.1 GenPept UniProtKB/Swiss-Prot:Q65WY8

    Gene LinkOut

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