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    LOC4331918 ubiquitin carboxyl-terminal hydrolase 26-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4331918, updated on 10-Oct-2024

    Summary

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    Gene symbol
    LOC4331918
    Gene description
    ubiquitin carboxyl-terminal hydrolase 26-like
    Locus tag
    OSNPB_030192800
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4331918 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (4847549..4855713)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (4836134..4844303)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene non-specific lipid-transfer protein-like protein At2g13820 Neighboring gene inositol-3-phosphate synthase 1-like Neighboring gene scarecrow-like protein 21 Neighboring gene putative yippee-like protein Os10g0369500

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables cysteine-type deubiquitinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables cysteine-type endopeptidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein deubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ubiquitin carboxyl-terminal hydrolase 26-like
    Names
    Os03g0192800
    Os03g0192900
    ubiquitin carboxyl-terminal hydrolase 26

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      4847549..4855713
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_026024068.2 → XP_025879853.1  ubiquitin carboxyl-terminal hydrolase 26-like isoform X2

      Conserved Domains (4) summary
      pfam06337
      Location:392 → 455
      DUSP; DUSP domain
      cl00155
      Location:726 → 815
      UBQ; Ubiquitin-like proteins
      cl02553
      Location:1 → 206
      Peptidase_C19; Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly ...
      cl12116
      Location:278 → 343
      DUSP; DUSP domain

    2. XM_066308686.1 → XP_066164783.1  ubiquitin carboxyl-terminal hydrolase 26-like isoform X1

    3. XM_015775370.3 → XP_015630856.1  ubiquitin carboxyl-terminal hydrolase 26-like isoform X1

      UniProtKB/Swiss-Prot
      A3AF13, Q0DUD1, Q10QK5
      UniProtKB/TrEMBL
      B9F5M9
      Conserved Domains (4) summary
      cd02668
      Location:107 → 444
      Peptidase_C19L; A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...
      cd01795
      Location:960 → 1055
      Ubl_USP48; ubiquitin-like (Ubl) domain found in ubiquitin-specific-processing protease 48 (USP48) and similar proteins
      pfam06337
      Location:630 → 693
      DUSP; DUSP domain
      cl12116
      Location:516 → 581
      DUSP; DUSP domain
    Nucleotide Protein
    Heading Accession and Version

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