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    LOC4331099 protein G1-like6 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4331099, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4331099
    Gene description
    protein G1-like6
    Locus tag
    OSNPB_020811000
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    TH1; AFD1; BLS1; BSG1; G1L6; OsG1L6; OsJ_08822; P0016F11.6; OJ1116_E04.14
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See LOC4331099 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (35184198..35186421, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (34687593..34689816, complement)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene CRIB domain-containing protein RIC5 Neighboring gene protein CUP-SHAPED COTYLEDON 1 Neighboring gene SAP-like protein BP-73 Neighboring gene wall-associated receptor kinase 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. A role for TRIANGULAR HULL1 in fine-tuning spikelet morphogenesis in rice. Sato DS, et al. Genes Genet Syst, 2014. PMID 25224972
    2. Beak-shaped grain 1/TRIANGULAR HULL 1, a DUF640 gene, is associated with grain shape, size and weight in rice. Yan D, et al. Sci China Life Sci, 2013 Mar. PMID 23526395
    3. The homeotic gene long sterile lemma (G1) specifies sterile lemma identity in the rice spikelet. Yoshida A, et al. Proc Natl Acad Sci U S A, 2009 Nov 24. PMID 19901325, Free PMC Article
    4. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    5. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in mRNA transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in response to light stimulus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein G1-like6
    Names
    G1-like6 protein
    LOC_Os02g56610
    Protein ABNORMAL FLOWER AND DWARF 1
    Protein BEAK LIKE SPIKELET 1
    Protein BEAK-SHAPED GRAIN 1
    Protein TRIANGULAR HULL 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001417043.1 → NP_001403972.1  protein G1-like6

      Status: VALIDATED

      Source sequence(s)
      AP014958
      UniProtKB/Swiss-Prot
      A0A0P0VR07, A2XAV5, Q6K5X1

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      35184198..35186421 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q6K5X1.1 GenPept UniProtKB/Swiss-Prot:Q6K5X1

    Gene LinkOut

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