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    LOC4333541 kxDL motif-containing protein 1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4333541, updated on 1-Aug-2024

    Summary

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    Gene symbol
    LOC4333541
    Gene description
    kxDL motif-containing protein 1
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4333541 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (25493789..25498357, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (24630178..24632634, complement)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene patatin-like protein 3 Neighboring gene histone-binding protein MSI1 homolog Neighboring gene phosphatidylinositol N-acetylglucosaminyltransferase subunit P Neighboring gene kxDL motif-containing protein LO9-177 Neighboring gene homeobox-leucine zipper protein HOX32-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Identification of rice (Oryza sativa) proteins linked to the cyclin-mediated regulation of the cell cycle. Cooper B, et al. Plant Mol Biol, 2003 Oct. PMID 14750518
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in lysosome localization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of BORC complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    kxDL motif-containing protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001418381.1 → NP_001405310.1  kxDL motif-containing protein 1

      Status: VALIDATED

      Source sequence(s)
      AK241670
      UniProtKB/TrEMBL
      Q0DQ32, Q84VB0

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      25493789..25498357 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_066308167.1 → XP_066164264.1  kxDL motif-containing protein 1 isoform X1

      UniProtKB/TrEMBL
      Q0DQ32, Q84VB0
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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