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    LOC4338524 nicotinamide adenine dinucleotide transporter 1, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4338524, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4338524
    Gene description
    nicotinamide adenine dinucleotide transporter 1, chloroplastic
    Locus tag
    OSNPB_050357200
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in leaves after flowering (RPKM 25.7), roots after flowering (RPKM 24.4) and 6 other tissues See more
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    Genomic context

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    See LOC4338524 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 5 NC_089039.1 (17025076..17028937)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (16928146..16932127)

    Chromosome 5 - NC_089039.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4338522 Neighboring gene uncharacterized LOC4338523 Neighboring gene uncharacterized LOC136356656 Neighboring gene WAT1-related protein At1g09380-like Neighboring gene uncharacterized LOC107277830 Neighboring gene developmentally-regulated G-protein 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables NAD transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in NAD transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    nicotinamide adenine dinucleotide transporter 1, chloroplastic
    Names
    Os05g0357200

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089039.1 Reference ASM3414082v1 Primary Assembly

      Range
      17025076..17028937
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015785282.3 → XP_015640768.1  nicotinamide adenine dinucleotide transporter 1, chloroplastic

      UniProtKB/TrEMBL
      A0A0N7KKL8, B8AX40, B9FP41, Q5W6Y0
      Conserved Domains (1) summary
      pfam00153
      Location:230 → 321
      Mito_carr; Mitochondrial carrier protein
    Nucleotide Protein
    Heading Accession and Version

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