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    LOC4327965 protein GAMETE CELL DEFECTIVE 1, mitochondrial-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4327965, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4327965
    Gene description
    protein GAMETE CELL DEFECTIVE 1, mitochondrial-like
    Locus tag
    OSNPB_010801700
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4327965 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (34563480..34566831, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (33956747..33960281, complement)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene putative glucan endo-1,3-beta-glucosidase GVI Neighboring gene probable glycerol-3-phosphate dehydrogenase [NAD(+)] 2, cytosolic Neighboring gene uncharacterized LOC107278258 Neighboring gene probable E3 ubiquitin-protein ligase RHC1A

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    General gene information

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    Homology

    General protein information

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    Preferred Names
    protein GAMETE CELL DEFECTIVE 1, mitochondrial-like
    Names
    Os01g0801700
    P0003D09.24
    mucin-like protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      34563480..34566831 complement
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015762521.3 → XP_015618007.1  protein GAMETE CELL DEFECTIVE 1, mitochondrial-like

      UniProtKB/Swiss-Prot
      A0A0P0V9A9, A2WW22, Q8S2G4
      Conserved Domains (1) summary
      pfam12824
      Location:144 → 174
      MRP-L20; Mitochondrial ribosomal protein subunit L20
    Nucleotide Protein
    Heading Accession and Version

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