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    LOC4344968 YTH domain-containing protein ECT1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4344968, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4344968
    Gene description
    YTH domain-containing protein ECT1
    Locus tag
    OSNPB_080224200
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1006_H01.121
    Expression
    Ubiquitous expression in roots after flowering (RPKM 74.6), leaves after flowering (RPKM 72.7) and 6 other tissues See more
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    Genomic context

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    See LOC4344968 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (7610782..7614662, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (7559169..7563204, complement)

    Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene cycloartenol Synthase Neighboring gene putative disease resistance protein RGA1 Neighboring gene serine/threonine-protein kinase STY13 Neighboring gene protein DAY-LENGTH-DEPENDENT DELAYED-GREENING 1, chloroplastic Neighboring gene glucan endo-1,3-beta-glucosidase 6

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables mRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mRNA destabilization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    YTH domain-containing protein ECT1
    Names
    Os08g0224200
    putative Rubisco subunit binding-protein beta subunit

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

      Range
      7610782..7614662 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015794442.3 → XP_015649928.1  YTH domain-containing protein ECT1 isoform X2

      UniProtKB/TrEMBL
      B8BBZ1
      Conserved Domains (1) summary
      pfam04146
      Location:321 → 459
      YTH; YT521-B-like domain

    2. XM_015794441.3 → XP_015649927.1  YTH domain-containing protein ECT1 isoform X1

      UniProtKB/TrEMBL
      B8BBZ1, Q0J776, Q7F1V1
      Conserved Domains (1) summary
      pfam04146
      Location:336 → 474
      YTH; YT521-B-like domain
    Nucleotide Protein
    Heading Accession and Version

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