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    LOC4323951 uncharacterized LOC4323951 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4323951, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4323951
    Gene description
    uncharacterized LOC4323951
    Locus tag
    OSNPB_010521500
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    P0516D04.8
    Expression
    Ubiquitous expression in roots after flowering (RPKM 17.5), leaves after flowering (RPKM 17.0) and 6 other tissues See more
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    Genomic context

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    See LOC4323951 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (19167605..19178109)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (18600981..18611574)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC9271859 Neighboring gene uncharacterized LOC112939270 Neighboring gene uncharacterized LOC4323950 Neighboring gene disease resistance protein RPM1 Neighboring gene uncharacterized LOC136355915

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    uncharacterized protein LOC4323951
    Names
    DNAJ heat shock N-terminal domain-containing protein-like
    Os01g0521500

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      19167605..19178109
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015766438.3 → XP_015621924.1  uncharacterized protein LOC4323951

      UniProtKB/TrEMBL
      A0A0P0V3E4, B8A9A3, Q0JMA2, Q5QMD6
      Conserved Domains (3) summary
      PTZ00341
      Location:216 → 389
      PTZ00341; Ring-infected erythrocyte surface antigen; Provisional
      pfam00226
      Location:332 → 389
      DnaJ; DnaJ domain
      pfam12572
      Location:452 → 594
      DUF3752; Protein of unknown function (DUF3752)
    Nucleotide Protein
    Heading Accession and Version

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