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    LOC4348450 acetyl-CoA carboxylase 1-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4348450, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC4348450
    Gene description
    acetyl-CoA carboxylase 1-like
    Locus tag
    OSNPB_100363300
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    ACC1; OsJ_31236
    Expression
    Broad expression in leaves after flowering (RPKM 44.2), roots after flowering (RPKM 43.6) and 6 other tissues See more
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    Genomic context

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    See LOC4348450 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    30
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 10 NC_029265.1 (11272733..11284989)

    Chromosome 10 - NC_029265.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4348448 Neighboring gene probable galacturonosyltransferase 3 Neighboring gene pentatricopeptide repeat-containing protein At4g26680, mitochondrial Neighboring gene F-box/kelch-repeat protein At1g22040

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029265.1 Chromosome 10 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. The Nucleotide-Dependent Interactome of Rice Heterotrimeric G-Protein α -Subunit. Biswal AK, et al. Proteomics, 2019 May. PMID 30866160
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables acetyl-CoA carboxylase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in fatty acid biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    acetyl-CoA carboxylase 1
    Names
    LOC_Os10g21910
    OSJNBa0073L01.2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029265.1 Reference IRGSP-1.0 Primary Assembly

      Range
      11272733..11284989
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015758643.2 → XP_015614129.1  acetyl-CoA carboxylase 1

      UniProtKB/Swiss-Prot
      B9G5C9, Q0IY62, Q7G3D3, Q8S6N5
      Conserved Domains (4) summary
      cd06850
      Location:680 → 744
      biotinyl_domain; The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, ...
      COG0439
      Location:42 → 546
      AccC; Biotin carboxylase [Lipid transport and metabolism]
      pfam01039
      Location:1599 → 2151
      Carboxyl_trans; Carboxyl transferase domain
      pfam08326
      Location:745 → 1495
      ACC_central; Acetyl-CoA carboxylase, central region

    2. XM_015758644.2 → XP_015614130.1  acetyl-CoA carboxylase 1

      UniProtKB/Swiss-Prot
      B9G5C9, Q0IY62, Q7G3D3, Q8S6N5
      Conserved Domains (4) summary
      cd06850
      Location:680 → 744
      biotinyl_domain; The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, ...
      COG0439
      Location:42 → 546
      AccC; Biotin carboxylase [Lipid transport and metabolism]
      pfam01039
      Location:1599 → 2151
      Carboxyl_trans; Carboxyl transferase domain
      pfam08326
      Location:745 → 1495
      ACC_central; Acetyl-CoA carboxylase, central region

    3. XM_026020896.1 → XP_025876681.1  acetyl-CoA carboxylase 1

      UniProtKB/Swiss-Prot
      B9G5C9, Q0IY62, Q7G3D3, Q8S6N5
      Conserved Domains (4) summary
      cd06850
      Location:680 → 744
      biotinyl_domain; The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, ...
      COG0439
      Location:42 → 546
      AccC; Biotin carboxylase [Lipid transport and metabolism]
      pfam01039
      Location:1599 → 2151
      Carboxyl_trans; Carboxyl transferase domain
      pfam08326
      Location:745 → 1495
      ACC_central; Acetyl-CoA carboxylase, central region
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8S6N5.1 GenPept UniProtKB/Swiss-Prot:Q8S6N5

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