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    LOC9267494 protein RDM1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 9267494, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC9267494
    Gene description
    protein RDM1
    Locus tag
    OSNPB_060630300
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC9267494 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (26361648..26364945)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (25498369..25501737)

    Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene protein FAR1-RELATED SEQUENCE 5-like Neighboring gene uncharacterized LOC107281380 Neighboring gene uncharacterized LOC112939413 Neighboring gene uncharacterized LOC9267232

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein RDM1; uncharacterized protein LOC9267494
    Names
    OSJNBa0023I22.45-2
    OSJNBa0048L03.18-1
    OSJNBa0048L03.18-2
    Os06g0630300

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

      Range
      26361648..26364945
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015785689.3 → XP_015641175.1  uncharacterized protein LOC9267494 isoform X1

      UniProtKB/TrEMBL
      A0A0P0WZF1, Q67IW6

    2. XM_015785688.3 → XP_015641174.1  uncharacterized protein LOC9267494 isoform X1

      UniProtKB/TrEMBL
      A0A0P0WZF1, Q67IW6

    3. XM_066311791.1 → XP_066167888.1  protein RDM1 isoform X3

    4. XM_066311790.1 → XP_066167887.1  protein RDM1 isoform X3

    5. XM_015785690.3 → XP_015641176.1  protein RDM1 isoform X2

      UniProtKB/TrEMBL
      A0A0P0WZ51, Q67IW5
      Conserved Domains (1) summary
      pfam09187
      Location:51 → 169
      RdDM_RDM1; RNA-directed DNA methylation 1
    Nucleotide Protein
    Heading Accession and Version

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