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    LOC4342551 low molecular mass early light-inducible protein HV60, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4342551, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4342551
    Gene description
    low molecular mass early light-inducible protein HV60, chloroplastic
    Locus tag
    OSNPB_070178700
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1361_E02.117
    Expression
    Broad expression in flower buds (RPKM 3.9), leaves before flowering (RPKM 2.3) and 4 other tissues See more
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    Genomic context

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    See LOC4342551 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (4203631..4204849)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (4143302..4144467)

    Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene ETO1-like protein 1 Neighboring gene heat stress transcription factor A-2b-like Neighboring gene low molecular mass early light-inducible protein HV60, chloroplastic Neighboring gene ruvB-like protein 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    low molecular mass early light-inducible protein HV60, chloroplastic
    Names
    Os07g0178700
    putative low molecular mass early light-induced protein,chloroplast precursor (ELIP)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

      Range
      4203631..4204849
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015789635.3 → XP_015645121.1  low molecular mass early light-inducible protein HV60, chloroplastic

      UniProtKB/TrEMBL
      A0A0P0X337, A2WMT1, A2YIQ7, A3BH53, Q69W91
      Conserved Domains (2) summary
      PLN00014
      Location:97 → 131
      PLN00014; light-harvesting-like protein 3; Provisional
      cl02879
      Location:89 → 191
      Chloroa_b-bind; Chlorophyll A-B binding protein
    Nucleotide Protein
    Heading Accession and Version

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