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    LOC4333676 BOI-related E3 ubiquitin-protein ligase 1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4333676, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4333676
    Gene description
    BOI-related E3 ubiquitin-protein ligase 1
    Locus tag
    OSNPB_030668500
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4333676 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (27230812..27232260)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (26363052..26364521)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene disease resistance protein RGA5-like Neighboring gene protein WHAT'S THIS FACTOR 1 homolog, chloroplastic Neighboring gene acidic leucine-rich nuclear phosphoprotein 32-related protein 2-like Neighboring gene DEAD-box ATP-dependent RNA helicase 10-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ubiquitin-protein transferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of programmed cell death IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    BOI-related E3 ubiquitin-protein ligase 1
    Names
    Os03g0668500

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      27230812..27232260
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015773317.3 → XP_015628803.1  BOI-related E3 ubiquitin-protein ligase 1

      UniProtKB/TrEMBL
      A2XKG0, Q60DM7, Q7Y198
    Nucleotide Protein
    Heading Accession and Version

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