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    LOC4334518 non-specific lipid-transfer protein 1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4334518, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4334518
    Gene description
    non-specific lipid-transfer protein 1
    Locus tag
    OSNPB_030808500
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Biased expression in flower buds (RPKM 63.3), milk grains (RPKM 57.9) and 1 other tissue See more
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    Genomic context

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    See LOC4334518 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (34771666..34772503)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (33798925..33799703)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene remorin 4.1-like Neighboring gene uncharacterized LOC107276907 Neighboring gene calcium-dependent protein kinase 8-like Neighboring gene uncharacterized LOC112938338

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables lipid binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in lipid transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    non-specific lipid-transfer protein 1
    Names
    Os03g0808500

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      34771666..34772503
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015774513.3 → XP_015629999.1  non-specific lipid-transfer protein 1

      UniProtKB/TrEMBL
      Q0DMH3, Q10BQ3
      Conserved Domains (1) summary
      cd01960
      Location:35 → 121
      nsLTP1; Non-specific lipid-transfer protein type 1 (nsLTP1) subfamily; Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. In addition to lipid transport and assembly, ...
    Nucleotide Protein
    Heading Accession and Version

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