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    MOCS2-DT MOCS2 divergent transcript [ Homo sapiens (human) ]

    Gene ID: 257396, updated on 22-Oct-2024

    Summary

    Official Symbol
    MOCS2-DTprovided by HGNC
    Official Full Name
    MOCS2 divergent transcriptprovided by HGNC
    Primary source
    HGNC:HGNC:27417
    See related
    Ensembl:ENSG00000247796 AllianceGenome:HGNC:27417
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Ubiquitous expression in testis (RPKM 1.8), thyroid (RPKM 1.8) and 24 other tissues See more
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    Genomic context

    See MOCS2-DT in Genome Data Viewer
    Location:
    5q11.2
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (53109842..53115126)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (53937628..53942912)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (52405672..52410956)

    Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene integrin subunit alpha 2 Neighboring gene uncharacterized LOC124900974 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16004 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16005 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:52409973-52410472 Neighboring gene CRISPRi-validated cis-regulatory element chr5.1275 Neighboring gene CRISPRi-validated cis-regulatory element chr5.1276 Neighboring gene molybdenum cofactor synthesis 2 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22545 Neighboring gene ribosomal protein L13a pseudogene 13 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16006 Neighboring gene uncharacterized LOC107986380

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Phenotypes

    EBI GWAS Catalog

    Description
    Genome-wide association study identifies three novel susceptibility loci for severe Acne vulgaris.
    EBI GWAS Catalog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_034107.2 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer transcript.
      Source sequence(s)
      AC008966
      Related
      ENST00000502171.2
    2. NR_104654.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) lacks an alternate exon, resulting in a shorter transcript, compared to variant 1.
      Source sequence(s)
      AK097893, BQ637503, DA398674, DR158823, HY215522
      Related
      ENST00000667672.3

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

      Range
      53109842..53115126
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060929.1 Alternate T2T-CHM13v2.0

      Range
      53937628..53942912
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)