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    LOC4344591 BTB/POZ domain-containing protein At1g30440 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4344591, updated on 13-Jul-2024

    Summary

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    Gene symbol
    LOC4344591
    Gene description
    BTB/POZ domain-containing protein At1g30440
    Locus tag
    OSNPB_080130600
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4344591 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (1735447..1741645, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (1723761..1730004, complement)

    Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene 2-succinylbenzoate--CoA ligase, chloroplastic/peroxisomal Neighboring gene 60S acidic ribosomal protein P0-like Neighboring gene hydroxyproline O-galactosyltransferase GALT2 Neighboring gene pentatricopeptide repeat-containing protein At1g53600, mitochondrial

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    BTB/POZ domain-containing protein At1g30440
    Names
    Bric-a-Brac, Tramtrack, Broad Complex BTB domain protein BTBN17
    OSJNBb0009H02.1
    Os08g0130600
    P0582D05.131
    putative non-phototropic hypocotyl 3 (NPH3)/phototropic response protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

      Range
      1735447..1741645 complement
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015794768.3 → XP_015650254.1  BTB/POZ domain-containing protein At1g30440

      UniProtKB/TrEMBL
      B8BAG6, Q0J877, Q7EZR6
      Conserved Domains (2) summary
      cd18312
      Location:20 → 123
      BTB_POZ_NPY3-like; BTB (Broad-Complex, Tramtrack and Bric a brac) /POZ (poxvirus and zinc finger) domain found in Arabidopsis thaliana protein naked pins in YUC mutants 3 (NPY3), Root phototropism protein 3 (RPT3), and similar proteins
      pfam03000
      Location:214 → 479
      NPH3; NPH3 family
    Nucleotide Protein
    Heading Accession and Version

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