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    LOC4325899 protein DEHYDRATION-INDUCED 19 homolog 3-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4325899, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4325899
    Gene description
    protein DEHYDRATION-INDUCED 19 homolog 3-like
    Locus tag
    OSNPB_010672400
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    DI19-3; OsDi19-3; OsJ_02966; OsJ_002873
    Expression
    Broad expression in roots before flowering (RPKM 219.4), leaves before flowering (RPKM 69.2) and 6 other tissues See more
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (28188762..28192186)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (27601491..27604915)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene pentatricopeptide repeat-containing protein At5g46100 Neighboring gene homeobox-DDT domain protein RLT2 Neighboring gene callose synthase 12 Neighboring gene small nucleolar RNA J33 Neighboring gene uncharacterized LOC4325901

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    protein DEHYDRATION-INDUCED 19 homolog 3
    Names
    LOC_Os01g48190
    P0007F06.11-1
    P0485G01.1-1
    fiber protein Fb2-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001401530.1 → NP_001388459.1  protein DEHYDRATION-INDUCED 19 homolog 3

      Status: VALIDATED

      Source sequence(s)
      AK061329, CI141744
      UniProtKB/Swiss-Prot
      A2ZWF1, B7E5F9, Q5QMP3
      UniProtKB/TrEMBL
      B8A789

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      28188762..28192186
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q5QMP3.1 GenPept UniProtKB/Swiss-Prot:Q5QMP3

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