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    LOC4334748 uncharacterized LOC4334748 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4334748, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4334748
    Gene description
    uncharacterized LOC4334748
    Locus tag
    OSNPB_030843300
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4334748 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (36414464..36416705, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (35441263..35443682, complement)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene ras-related protein RABA2a Neighboring gene uncharacterized LOC4334747 Neighboring gene small ribosomal subunit protein bS6c Neighboring gene uncharacterized LOC4334750

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. The Nucleotide-Dependent Interactome of Rice Heterotrimeric G-Protein α -Subunit. Biswal AK, et al. Proteomics, 2019 May. PMID 30866160
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in response to desiccation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4334748
    Names
    Os03g0843300

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      36414464..36416705 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015774213.3 → XP_015629699.1  uncharacterized protein LOC4334748

      UniProtKB/TrEMBL
      A0A0P0W5L4, A3APM5, B8AN79, Q75LD9
      Conserved Domains (2) summary
      smart00769
      Location:61 → 155
      WHy; Water Stress and Hypersensitive response
      pfam03168
      Location:206 → 301
      LEA_2; Late embryogenesis abundant protein

    2. XM_015774214.3 → XP_015629700.1  uncharacterized protein LOC4334748

      UniProtKB/TrEMBL
      A0A0P0W5L4, A3APM5, B8AN79, Q75LD9
      Conserved Domains (2) summary
      smart00769
      Location:61 → 155
      WHy; Water Stress and Hypersensitive response
      pfam03168
      Location:206 → 301
      LEA_2; Late embryogenesis abundant protein
    Nucleotide Protein
    Heading Accession and Version

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