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    LOC4343299 protein CHROMATIN REMODELING 4 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4343299, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4343299
    Gene description
    protein CHROMATIN REMODELING 4
    Locus tag
    OSNPB_070497000
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    CHR4
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    Genomic context

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    See LOC4343299 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (18850934..18865324, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (18625410..18639328, complement)

    Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene protein EXORDIUM-like 5 Neighboring gene uncharacterized LOC4343298 Neighboring gene peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase-like Neighboring gene myb-related protein Hv33

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Mutations in the Rice OsCHR4 Gene, Encoding a CHD3 Family Chromatin Remodeler, Induce Narrow and Rolled Leaves with Increased Cuticular Wax. Guo T, et al. Int J Mol Sci, 2019 May 25. PMID 31130602, Free PMC Article
    2. CHR729 Is a CHD3 Protein That Controls Seedling Development in Rice. Ma X, et al. PLoS One, 2015. PMID 26398683, Free PMC Article
    3. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    4. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    5. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP hydrolysis activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP-dependent chromatin remodeler activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables chromatin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables histone binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in chromatin remodeling IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of chromatin IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein CHROMATIN REMODELING 4
    Names
    CHR729
    CHROMATIN REMODELING 4
    Os07g0497000
    Os07g0497100

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

      Range
      18850934..18865324 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015791109.3 → XP_015646595.1  protein CHROMATIN REMODELING 4

      UniProtKB/TrEMBL
      A0A6M2ZZY0, B9FXD3
      Conserved Domains (8) summary
      cd11660
      Location:1712 → 1756
      SANT_TRF; Telomere repeat binding factor-like DNA-binding domains of the SANT/myb-like family
      PLN03142
      Location:662 → 1190
      PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
      PHA03247
      Location:1974 → 2259
      PHA03247; large tegument protein UL36; Provisional
      COG5034
      Location:19 → 124
      TNG2; Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics]
      cd15532
      Location:79 → 120
      PHD2_CHD_II; PHD finger 2 found in class II Chromodomain-Helicase-DNA binding (CHD) proteins
      cd18659
      Location:582 → 636
      CD2_tandem; repeat 2 of paired tandem chromodomains
      cd18660
      Location:509 → 568
      CD1_tandem; repeat 1 of paired tandem chromodomains
      pfam06465
      Location:1277 → 1324
      DUF1087; Domain of Unknown Function (DUF1087)

    2. XM_015791108.3 → XP_015646594.1  protein CHROMATIN REMODELING 4

      UniProtKB/TrEMBL
      A0A6M2ZZY0, B9FXD3
      Conserved Domains (8) summary
      cd11660
      Location:1712 → 1756
      SANT_TRF; Telomere repeat binding factor-like DNA-binding domains of the SANT/myb-like family
      PLN03142
      Location:662 → 1190
      PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
      PHA03247
      Location:1974 → 2259
      PHA03247; large tegument protein UL36; Provisional
      COG5034
      Location:19 → 124
      TNG2; Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics]
      cd15532
      Location:79 → 120
      PHD2_CHD_II; PHD finger 2 found in class II Chromodomain-Helicase-DNA binding (CHD) proteins
      cd18659
      Location:582 → 636
      CD2_tandem; repeat 2 of paired tandem chromodomains
      cd18660
      Location:509 → 568
      CD1_tandem; repeat 1 of paired tandem chromodomains
      pfam06465
      Location:1277 → 1324
      DUF1087; Domain of Unknown Function (DUF1087)

    3. XM_015791111.3 → XP_015646597.1  protein CHROMATIN REMODELING 4

      UniProtKB/TrEMBL
      A0A6M2ZZY0, B9FXD3
      Conserved Domains (8) summary
      cd11660
      Location:1712 → 1756
      SANT_TRF; Telomere repeat binding factor-like DNA-binding domains of the SANT/myb-like family
      PLN03142
      Location:662 → 1190
      PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
      PHA03247
      Location:1974 → 2259
      PHA03247; large tegument protein UL36; Provisional
      COG5034
      Location:19 → 124
      TNG2; Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics]
      cd15532
      Location:79 → 120
      PHD2_CHD_II; PHD finger 2 found in class II Chromodomain-Helicase-DNA binding (CHD) proteins
      cd18659
      Location:582 → 636
      CD2_tandem; repeat 2 of paired tandem chromodomains
      cd18660
      Location:509 → 568
      CD1_tandem; repeat 1 of paired tandem chromodomains
      pfam06465
      Location:1277 → 1324
      DUF1087; Domain of Unknown Function (DUF1087)

    4. XM_015791112.3 → XP_015646598.1  protein CHROMATIN REMODELING 4

      UniProtKB/TrEMBL
      A0A6M2ZZY0, B9FXD3
      Conserved Domains (8) summary
      cd11660
      Location:1712 → 1756
      SANT_TRF; Telomere repeat binding factor-like DNA-binding domains of the SANT/myb-like family
      PLN03142
      Location:662 → 1190
      PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
      PHA03247
      Location:1974 → 2259
      PHA03247; large tegument protein UL36; Provisional
      COG5034
      Location:19 → 124
      TNG2; Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics]
      cd15532
      Location:79 → 120
      PHD2_CHD_II; PHD finger 2 found in class II Chromodomain-Helicase-DNA binding (CHD) proteins
      cd18659
      Location:582 → 636
      CD2_tandem; repeat 2 of paired tandem chromodomains
      cd18660
      Location:509 → 568
      CD1_tandem; repeat 1 of paired tandem chromodomains
      pfam06465
      Location:1277 → 1324
      DUF1087; Domain of Unknown Function (DUF1087)

    5. XM_015791110.3 → XP_015646596.1  protein CHROMATIN REMODELING 4

      UniProtKB/TrEMBL
      A0A6M2ZZY0, B9FXD3
      Conserved Domains (8) summary
      cd11660
      Location:1712 → 1756
      SANT_TRF; Telomere repeat binding factor-like DNA-binding domains of the SANT/myb-like family
      PLN03142
      Location:662 → 1190
      PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
      PHA03247
      Location:1974 → 2259
      PHA03247; large tegument protein UL36; Provisional
      COG5034
      Location:19 → 124
      TNG2; Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics]
      cd15532
      Location:79 → 120
      PHD2_CHD_II; PHD finger 2 found in class II Chromodomain-Helicase-DNA binding (CHD) proteins
      cd18659
      Location:582 → 636
      CD2_tandem; repeat 2 of paired tandem chromodomains
      cd18660
      Location:509 → 568
      CD1_tandem; repeat 1 of paired tandem chromodomains
      pfam06465
      Location:1277 → 1324
      DUF1087; Domain of Unknown Function (DUF1087)
    Nucleotide Protein
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