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    LOC4345108 disease resistance protein RPM1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4345108, updated on 10-Oct-2024

    Summary

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    Gene symbol
    LOC4345108
    Gene description
    disease resistance protein RPM1
    Locus tag
    OSNPB_080261000
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4345108 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (9881322..9887122)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (9824563..9830748)

    Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene tetraspanin-7 Neighboring gene disease resistance protein RPM1-like Neighboring gene uncharacterized LOC4345109 Neighboring gene alkane hydroxylase MAH1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ADP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in defense response to other organism IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    disease resistance protein RPM1
    Names
    B1063H10.19
    Os08g0261000
    putative RPR1h

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

      Range
      9881322..9887122
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_066303547.1 → XP_066159644.1  disease resistance protein RPM1

      UniProtKB/TrEMBL
      Q0J6V9, Q6Z5Z6

    2. XM_026027650.2 → XP_025883435.1  disease resistance protein RPM1

      UniProtKB/TrEMBL
      B9FZY2, Q0J6V9, Q6Z5Z6
      Conserved Domains (4) summary
      COG4886
      Location:634 → 765
      LRR; Leucine-rich repeat (LRR) protein [Transcription]
      cd14798
      Location:89 → 184
      RX-CC_like; Coiled-coil domain of the potato virux X resistance protein and similar proteins
      sd00033
      Location:634 → 656
      LRR_RI; leucine-rich repeat [structural motif]
      pfam00931
      Location:249 → 513
      NB-ARC; NB-ARC domain

    3. XM_066303546.1 → XP_066159643.1  disease resistance protein RPM1

      UniProtKB/TrEMBL
      Q0J6V9, Q6Z5Z6
    Nucleotide Protein
    Heading Accession and Version

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