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    LOC4345613 annexin D5 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4345613, updated on 1-Aug-2024

    Summary

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    Gene symbol
    LOC4345613
    Gene description
    annexin D5
    Locus tag
    OSNPB_080425700
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Biased expression in roots before flowering (RPKM 13.8), flower buds (RPKM 4.3) and 3 other tissues See more
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    Genomic context

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    Location:
    chromosome: 8
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (20596767..20598760)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (20459649..20461582)

    Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene endoglucanase 21 Neighboring gene type IV inositol polyphosphate 5-phosphatase 9 Neighboring gene uncharacterized LOC4345614 Neighboring gene uncharacterized LOC112936054

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables calcium-dependent phospholipid binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    annexin D5
    Names
    Os08g0425700
    P0456B03.120
    putative calcium-binding protein annexin

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

      Range
      20596767..20598760
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015795398.3 → XP_015650884.1  annexin D5 isoform X2

      UniProtKB/TrEMBL
      A0A0P0XG10, A2YVD9, Q84Q48
      Conserved Domains (1) summary
      pfam00191
      Location:251 → 316
      Annexin

    2. XM_066303326.1 → XP_066159423.1  annexin D5 isoform X1

      UniProtKB/TrEMBL
      A2YVD9
    Nucleotide Protein
    Heading Accession and Version

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