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    LOC4341597 plant UBX domain-containing protein 4 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4341597, updated on 12-Jul-2024

    Summary

    Gene symbol
    LOC4341597
    Gene description
    plant UBX domain-containing protein 4
    Locus tag
    OSNPB_060634600
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in mature seeds (RPKM 39.5), flower buds (RPKM 26.0) and 6 other tissues See more
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    Genomic context

    See LOC4341597 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (26600974..26605103, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (25737376..25741541, complement)

    Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene nudix hydrolase 2 Neighboring gene protein STRUBBELIG-RECEPTOR FAMILY 8 Neighboring gene probable sucrose-phosphate synthase 5 Neighboring gene uncharacterized LOC136356938

    Genomic regions, transcripts, and products

    Expression

    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    General gene information

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ubiquitin binding IEA
    Inferred from Electronic Annotation
    more info
    PubMed 
    Process Evidence Code Pubs
    involved_in Golgi organization IEA
    Inferred from Electronic Annotation
    more info
    PubMed 
    involved_in autophagosome assembly IEA
    Inferred from Electronic Annotation
    more info
    PubMed 
    involved_in membrane fusion IEA
    Inferred from Electronic Annotation
    more info
    PubMed 
    involved_in nuclear membrane reassembly IEA
    Inferred from Electronic Annotation
    more info
    PubMed 
    involved_in proteasome-mediated ubiquitin-dependent protein catabolic process IEA
    Inferred from Electronic Annotation
    more info
    PubMed 
    Component Evidence Code Pubs
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    PubMed 

    General protein information

    Preferred Names
    plant UBX domain-containing protein 4
    Names
    OSJNBa0019I19.10
    Os06g0634600
    phosphatase-like

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

      Range
      26600974..26605103 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015788234.3XP_015643720.1  plant UBX domain-containing protein 4

      UniProtKB/TrEMBL
      A0A0P0WZ08, A2YFC5, Q67V39
      Conserved Domains (3) summary
      cd01770
      Location:380449
      UBX_UBXN2; Ubiquitin regulatory domain X (UBX) found in UBX domain-containing proteins UBXN2A, UBXN2B, NSFL1C/UBXN2C, and similar proteins
      pfam14555
      Location:1852
      UBA_4; UBA-like domain
      cl02662
      Location:257348
      SEP; SEP domain