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    LOC4328127 histone deacetylase complex subunit SAP18 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4328127, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4328127
    Gene description
    histone deacetylase complex subunit SAP18
    Locus tag
    OSNPB_020122000
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1020_C02.26
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    Genomic context

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    See LOC4328127 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (1165877..1168094, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (1158870..1161303, complement)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene succinate dehydrogenase subunit 3-1, mitochondrial-like Neighboring gene pentatricopeptide repeat-containing protein At1g02060, chloroplastic Neighboring gene UTP:RNA uridylyltransferase 1 Neighboring gene protein DETOXIFICATION 46, chloroplastic

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables transcription corepressor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables transcription factor binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in negative regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    histone deacetylase complex subunit SAP18
    Names
    Os02g0122000
    putative P18

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      1165877..1168094 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015770824.3 → XP_015626310.1  histone deacetylase complex subunit SAP18

      UniProtKB/TrEMBL
      A2X0A2, A3A2K7, Q6ZH90
      Conserved Domains (1) summary
      pfam06487
      Location:33 → 151
      SAP18; Sin3 associated polypeptide p18 (SAP18)

    2. XM_015770825.3 → XP_015626311.1  histone deacetylase complex subunit SAP18

      UniProtKB/TrEMBL
      A2X0A2, A3A2K7, Q6ZH90
      Conserved Domains (1) summary
      pfam06487
      Location:33 → 151
      SAP18; Sin3 associated polypeptide p18 (SAP18)

    3. XM_015770826.3 → XP_015626312.1  histone deacetylase complex subunit SAP18

      UniProtKB/TrEMBL
      A2X0A2, A3A2K7, Q6ZH90
      Conserved Domains (1) summary
      pfam06487
      Location:33 → 151
      SAP18; Sin3 associated polypeptide p18 (SAP18)
    Nucleotide Protein
    Heading Accession and Version

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