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    LOC4343785 probable indole-3-acetic acid-amido synthetase GH3.8 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4343785, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4343785
    Gene description
    probable indole-3-acetic acid-amido synthetase GH3.8
    Locus tag
    OSNPB_070592600
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    GH3-8; GH3.8; OsMGH3; OsGH3-8; OsJ_24963; OsJ_023992; OJ1710_H11.110
    Expression
    Biased expression in roots before flowering (RPKM 127.5), flowers (RPKM 82.4) and 2 other tissues See more
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    Genomic context

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    See LOC4343785 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (24374221..24376651, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (24149728..24152093, complement)

    Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene momilactone A synthase-like Neighboring gene aspartic proteinase 36 Neighboring gene FRIGIDA-like protein 3 Neighboring gene zinc finger protein 7 Neighboring gene U2 spliceosomal RNA

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Modulation of plant architecture by the miR156f-OsSPL7-OsGH3.8 pathway in rice. Dai Z, et al. J Exp Bot, 2018 Oct 12. PMID 30053063, Free PMC Article
    2. The Systemic Acquired Resistance Regulator OsNPR1 Attenuates Growth by Repressing Auxin Signaling through Promoting IAA-Amido Synthase Expression. Li X, et al. Plant Physiol, 2016 Sep. PMID 27378815, Free PMC Article
    3. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. The combined data show that the miR156f-OsSPL7-OsGH3.8 pathway regulates tiller number and plant height in rice, and this pathway may allow crosstalk between miR156 and auxin.
      Title: Modulation of plant architecture by the miR156f-OsSPL7-OsGH3.8 pathway in rice.
    2. The protein of Gene:4336597 regulates the transcription of this gene by binding to the promoter.
      Title: Modulation of plant architecture by the miR156f-OsSPL7-OsGH3.8 pathway in rice.
    3. Data show that OsNPR1 affects rice growth and development by disrupting the auxin pathway at least partially through indirectly up-regulating IAA-amido synthetase OsGH3.8 expression.
      Title: The Systemic Acquired Resistance Regulator OsNPR1 Attenuates Growth by Repressing Auxin Signaling through Promoting IAA-Amido Synthase Expression.
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables acid-amino acid ligase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    indole-3-acetic acid-amido synthetase GH3.8
    Names
    Auxin-responsive GH3-like protein 8
    Indole-3-acetic acid-amido synthetase GH3.8
    LOC_Os07g40290
    putative Nt-gh3 deduced protein
    NP_001409179.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001422250.1 → NP_001409179.1  indole-3-acetic acid-amido synthetase GH3.8

      Status: VALIDATED

      Source sequence(s)
      AK101193, AP014963, CI136400, CI148513, CI235821, CI596225, CI606932, CI646638
      UniProtKB/Swiss-Prot
      A2YN96, A3BLS0, B9FY76, Q0D4Z6, Q7XIN9
      UniProtKB/TrEMBL
      B1N696

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

      Range
      24374221..24376651 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q0D4Z6.1 GenPept UniProtKB/Swiss-Prot:Q0D4Z6

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