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    LOC4333918 anthranilate synthase beta subunit 2, chloroplastic-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4333918, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4333918
    Gene description
    anthranilate synthase beta subunit 2, chloroplastic-like
    Locus tag
    OSNPB_030718000
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    ASB2; OASB2; OsASB2; OsJ_12361
    Expression
    Broad expression in leaves after flowering (RPKM 38.6), roots after flowering (RPKM 21.1) and 6 other tissues See more
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    Genomic context

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    See LOC4333918 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (29946994..29950786, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (29067753..29071560, complement)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene probable histidine kinase 4 Neighboring gene UV-B-induced protein At3g17800, chloroplastic Neighboring gene actin-1-like Neighboring gene protein FAR1-RELATED SEQUENCE 5

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. In vitro reconstitution of rice anthranilate synthase: distinct functional properties of the alpha subunits OASA1 and OASA2. Kanno T, et al. Plant Mol Biol, 2004 Jan. PMID 15159631
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables anthranilate synthase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in tryptophan biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    anthranilate synthase beta subunit 2, chloroplastic
    Names
    Anthranilate synthase, glutamine amidotransferase component 2-2
    LOC_Os03g50880
    anthranilate synthase beta 2 subunit
    NP_001405523.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001418594.1 → NP_001405523.1  anthranilate synthase beta subunit 2, chloroplastic

      Status: VALIDATED

      Source sequence(s)
      AK105178, CF336434, CI761166
      UniProtKB/Swiss-Prot
      A0A0P0W2T5, Q764B9
      UniProtKB/TrEMBL
      B8AQP1

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      29946994..29950786 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q764B9.1 GenPept UniProtKB/Swiss-Prot:Q764B9

    Gene LinkOut

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