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    LOC4329969 uncharacterized LOC4329969 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4329969, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4329969
    Gene description
    uncharacterized LOC4329969
    Locus tag
    OSNPB_020613200
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1004_A05.39
    Expression
    Ubiquitous expression in roots after flowering (RPKM 93.1), flower buds (RPKM 86.9) and 6 other tissues See more
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    Genomic context

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    See LOC4329969 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (24649561..24656968, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (24166832..24174274, complement)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene calcium uptake protein, mitochondrial Neighboring gene probable glycosyltransferase At5g20260 Neighboring gene uncharacterized LOC4329970 Neighboring gene uncharacterized LOC136355388

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4329969
    Names
    Os02g0613200
    leucine-rich repeat-like protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      24649561..24656968 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015770495.3 → XP_015625981.1  uncharacterized protein LOC4329969

      UniProtKB/TrEMBL
      A0A0P0VLL8, A2X756, Q0DZK6, Q6K620
      Conserved Domains (4) summary
      cd09293
      Location:112 → 254
      AMN1; Antagonist of mitotic exit network protein 1
      sd00033
      Location:187 → 211
      LRR_RI; leucine-rich repeat [structural motif]
      sd00034
      Location:112 → 137
      LRR_AMN1; leucine-rich repeat [structural motif]
      NF033189
      Location:195 → 554
      internalin_A; class 1 internalin InlA

    2. XM_015770494.3 → XP_015625980.1  uncharacterized protein LOC4329969

      UniProtKB/TrEMBL
      A0A0P0VLL8, A2X756, Q0DZK6, Q6K620
      Conserved Domains (4) summary
      cd09293
      Location:112 → 254
      AMN1; Antagonist of mitotic exit network protein 1
      sd00033
      Location:187 → 211
      LRR_RI; leucine-rich repeat [structural motif]
      sd00034
      Location:112 → 137
      LRR_AMN1; leucine-rich repeat [structural motif]
      NF033189
      Location:195 → 554
      internalin_A; class 1 internalin InlA

    RNA

    1. XR_010739431.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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