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    LOC4352815 methyl-CpG-binding domain-containing protein 11 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4352815, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4352815
    Gene description
    methyl-CpG-binding domain-containing protein 11
    Locus tag
    OSNPB_120620400
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4352815 in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 12 NC_089046.1 (27142173..27146706, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 12 NC_029267.1 (26425350..26430078, complement)

    Chromosome 12 - NC_089046.1Genomic Context describing neighboring genes Neighboring gene probable LRR receptor-like serine/threonine-protein kinase At3g47570 Neighboring gene E3 ubiquitin-protein ligase EL5-like Neighboring gene RING-H2 finger protein ATL70-like Neighboring gene uncharacterized LOC4352816 Neighboring gene probable serine/threonine-protein kinase At1g54610

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    methyl-CpG-binding domain-containing protein 11
    Names
    Os12g0620400

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089046.1 Reference ASM3414082v1 Primary Assembly

      Range
      27142173..27146706 complement
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015764400.3 → XP_015619886.1  methyl-CpG-binding domain-containing protein 11 isoform X2

      UniProtKB/TrEMBL
      B9GEC0, H2KX66
      Conserved Domains (2) summary
      PLN03237
      Location:108 → 295
      PLN03237; DNA topoisomerase 2; Provisional
      cl00110
      Location:34 → 92
      MBD; MeCP2, MBD1, MBD2, MBD3, MBD4, CLLD8-like, and BAZ2A-like proteins constitute a family of proteins that share the methyl-CpG-binding domain (MBD). The MBD consists of about 70 residues and is defined as the minimal region required for binding to ...

    2. XM_015764399.2 → XP_015619885.1  methyl-CpG-binding domain-containing protein 11 isoform X1

      UniProtKB/TrEMBL
      B8BN22, B9GEC0, Q2QM23
      Conserved Domains (2) summary
      PLN03237
      Location:112 → 299
      PLN03237; DNA topoisomerase 2; Provisional
      cl00110
      Location:34 → 96
      MBD; MeCP2, MBD1, MBD2, MBD3, MBD4, CLLD8-like, and BAZ2A-like proteins constitute a family of proteins that share the methyl-CpG-binding domain (MBD). The MBD consists of about 70 residues and is defined as the minimal region required for binding to ...
    Nucleotide Protein
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