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    LOC4341312 protein NDL1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4341312, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4341312
    Gene description
    protein NDL1
    Locus tag
    OSNPB_060563000
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4341312 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (22496122..22500672, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (21637485..21641990, complement)

    Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene T-complex protein 1 subunit epsilon Neighboring gene protein SHORT ROOT IN SALT MEDIUM 1 Neighboring gene serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B Neighboring gene diacylglycerol O-acyltransferase 1-2-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    protein NDL1
    Names
    Os06g0563000
    P0656E03.22
    pollen-specific protein SF21
    putative SF21C1 protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

      Range
      22496122..22500672 complement
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015789037.3 → XP_015644523.1  protein NDL1

      UniProtKB/TrEMBL
      A0A0P0WY68, B8B3S5, B9FTT0, Q5Z901
      Conserved Domains (1) summary
      cl21494
      Location:22 → 306
      Abhydrolase; alpha/beta hydrolases
    Nucleotide Protein
    Heading Accession and Version

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