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    LOC4342304 phytosulfokines 4-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4342304, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4342304
    Gene description
    phytosulfokines 4-like
    Locus tag
    OSNPB_070124100
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    PSK4; OsJ_22943; OJ1007_H09.107
    Expression
    Biased expression in leaves after flowering (RPKM 254.9), roots after flowering (RPKM 151.1) and 3 other tissues See more
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    Genomic context

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    Location:
    chromosome: 7
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (1265645..1266412, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (1254964..1255854, complement)

    Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene glycine-rich RNA-binding protein 2 Neighboring gene protein PHLOEM PROTEIN 2-LIKE A10 Neighboring gene small nucleolar RNA snoR8a Neighboring gene eukaryotic translation initiation factor 3 subunit C

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables growth factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cell population proliferation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in extracellular region IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    phytosulfokines 4
    Names
    LOC_Os07g03200
    OSJNBa0057M23.146
    OSJNBa0057M23.146. P0474G09.107
    P0474G09.107

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001421961.1 → NP_001408890.1  phytosulfokines 4 precursor

      Status: VALIDATED

      Source sequence(s)
      AU068855, CI307081
      UniProtKB/Swiss-Prot
      Q0D8V6, Q7F2B2, Q9AR88
      UniProtKB/TrEMBL
      A2YHR4

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

      Range
      1265645..1266412 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9AR88.1 GenPept UniProtKB/Swiss-Prot:Q9AR88

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