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    LOC4345078 ATP synthase subunit epsilon, mitochondrial [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4345078, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4345078
    Gene description
    ATP synthase subunit epsilon, mitochondrial
    Locus tag
    OSNPB_080250200
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in flowers (RPKM 146.1), flower buds (RPKM 126.5) and 6 other tissues See more
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    Genomic context

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    Location:
    chromosome: 8
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (9233384..9236522, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (9177329..9180485, complement)

    Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene diacylglycerol kinase 4 Neighboring gene pentatricopeptide repeat-containing protein At5g66520 Neighboring gene naringenin,2-oxoglutarate 3-dioxygenase Neighboring gene large ribosomal subunit protein P2A Neighboring gene thioredoxin domain-containing protein 9 homolog

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables proton-transporting ATP synthase activity, rotational mechanism IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in proton motive force-driven mitochondrial ATP synthesis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in mitochondrial inner membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of mitochondrial proton-transporting ATP synthase complex, catalytic sector F(1) IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ATP synthase subunit epsilon, mitochondrial
    Names
    OSJNBa0012K14.29
    Os08g0250200
    putative ATP synthase epsilon chain, mitochondrial

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

      Range
      9233384..9236522 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015792777.3 → XP_015648263.1  ATP synthase subunit epsilon, mitochondrial

      UniProtKB/TrEMBL
      A0A0P0XE57, B7F9W4, Q0J6X7
      Conserved Domains (1) summary
      pfam04627
      Location:9 → 57
      ATP-synt_Eps; Mitochondrial ATP synthase epsilon chain
    Nucleotide Protein
    Heading Accession and Version

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