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    LOC4331683 YTH domain-containing protein ECT4 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4331683, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4331683
    Gene description
    YTH domain-containing protein ECT4
    Locus tag
    OSNPB_030158500
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in roots before flowering (RPKM 396.6), milk grains (RPKM 260.1) and 6 other tissues See more
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (3135447..3139685, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (3126243..3130487, complement)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene photosynthetic NDH subunit of subcomplex B 2, chloroplastic Neighboring gene uncharacterized LOC107280462 Neighboring gene transfer RNA leucine (anticodon CAA) Neighboring gene subtilisin-like protease SBT3.18 Neighboring gene pentatricopeptide repeat-containing protein At3g28660 Neighboring gene probable serine/threonine-protein kinase PBL16

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables mRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mRNA destabilization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    YTH domain-containing protein ECT4
    Names
    Os03g0158500
    YT521-B-like family protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      3135447..3139685 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015774374.3 → XP_015629860.1  YTH domain-containing protein ECT4 isoform X2

      UniProtKB/TrEMBL
      A0A8J8XGZ1, B9FBE9, Q0DV02, Q10RI4, Q8H8C1
      Conserved Domains (2) summary
      PHA02732
      Location:144 → 276
      PHA02732; hypothetical protein; Provisional
      pfam04146
      Location:464 → 602
      YTH; YT521-B-like domain

    2. XM_015774373.3 → XP_015629859.1  YTH domain-containing protein ECT4 isoform X1

      UniProtKB/TrEMBL
      Q10RI3, Q8H8C1
      Conserved Domains (2) summary
      PHA02732
      Location:145 → 277
      PHA02732; hypothetical protein; Provisional
      pfam04146
      Location:465 → 603
      YTH; YT521-B-like domain
    Nucleotide Protein
    Heading Accession and Version

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