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    LOC4337223 oryzain alpha chain-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4337223, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4337223
    Gene description
    oryzain alpha chain-like
    Locus tag
    OSNPB_040650000
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    H0212B02.7
    Annotation information
    Annotation category: suggests misassembly
    Expression
    Broad expression in leaves after flowering (RPKM 623.7), leaves before flowering (RPKM 597.3) and 5 other tissues See more
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    Genomic context

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    See LOC4337223 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (33638870..33642483, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (33123325..33126995, complement)

    Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene probable inactive receptor kinase At5g67200 Neighboring gene protein IRX15-LIKE Neighboring gene GDSL esterase/lipase At5g03610 Neighboring gene probable glucuronosyltransferase Os04g0650300

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Induced expression of oryzain alpha gene encoding a cysteine proteinase under stress conditions. Fu Y, et al. J Plant Res, 2007 May. PMID 17404686
    2. Molecular cloning and gibberellin-induced expression of multiple cysteine proteinases of rice seeds (oryzains). Watanabe H, et al. J Biol Chem, 1991 Sep 5. PMID 1885617
    3. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables cysteine-type endopeptidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in proteolysis involved in protein catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in extracellular space IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in lysosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    oryzain alpha chain
    Names
    LOC_Os04g55650
    OSJNBb0059K02.8
    Oryzain alpha chain
    NP_001389372.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001402443.1 → NP_001389372.1  oryzain alpha chain precursor

      Status: VALIDATED

      Source sequence(s)
      KR905695
      UniProtKB/Swiss-Prot
      P25776, Q25AN0, Q7XMQ3
      UniProtKB/TrEMBL
      B9FCV2, Q076Q8

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

      Range
      33638870..33642483 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P25776.2 GenPept UniProtKB/Swiss-Prot:P25776

    Gene LinkOut

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