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    LOC4343924 polcalcin Phl p 7 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4343924, updated on 1-Aug-2024

    Summary

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    Gene symbol
    LOC4343924
    Gene description
    polcalcin Phl p 7
    Locus tag
    OSNPB_070619200
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in leaves after flowering (RPKM 46.8), roots after flowering (RPKM 42.0) and 4 other tissues See more
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    Genomic context

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    Location:
    chromosome: 7
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (25795260..25798879)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (25569035..25572698)

    Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC136357458 Neighboring gene protein WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 1 Neighboring gene uncharacterized LOC136357199 Neighboring gene uncharacterized LOC4343925

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    polcalcin Phl p 7
    Names
    Os07g0619200

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

      Range
      25795260..25798879
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_066312158.1 → XP_066168255.1  polcalcin Phl p 7 isoform X2

      UniProtKB/TrEMBL
      A0A0P0X8T0, A0A0P0X8W5, A0A8J8YCR9, A2YNR8, A3BM90, Q0D4L7

    2. XM_066312159.1 → XP_066168256.1  polcalcin Phl p 7 isoform X2

      UniProtKB/TrEMBL
      A0A0P0X8T0, A0A0P0X8W5, A0A8J8YCR9, A2YNR8, A3BM90, Q0D4L7

    3. XM_066312163.1 → XP_066168260.1  polcalcin Phl p 7 isoform X2

      UniProtKB/TrEMBL
      A0A0P0X8T0, A0A0P0X8W5, A0A8J8YCR9, A2YNR8, A3BM90, Q0D4L7

    4. XM_066312160.1 → XP_066168257.1  polcalcin Phl p 7 isoform X2

      UniProtKB/TrEMBL
      A0A0P0X8T0, A0A0P0X8W5, A0A8J8YCR9, A2YNR8, A3BM90, Q0D4L7

    5. XM_066312161.1 → XP_066168258.1  polcalcin Phl p 7 isoform X2

      UniProtKB/TrEMBL
      A0A0P0X8T0, A0A0P0X8W5, A0A8J8YCR9, A2YNR8, A3BM90, Q0D4L7

    6. XM_066312162.1 → XP_066168259.1  polcalcin Phl p 7 isoform X2

      UniProtKB/TrEMBL
      A0A0P0X8T0, A0A0P0X8W5, A0A8J8YCR9, A2YNR8, A3BM90, Q0D4L7

    7. XM_015789235.3 → XP_015644721.1  polcalcin Phl p 7 isoform X2

      UniProtKB/TrEMBL
      A0A0P0X8T0, A0A0P0X8W5, A0A8J8YCR9, A2YNR8, A3BM90, Q0D4L7
      Conserved Domains (2) summary
      cd00051
      Location:24 → 72
      EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...
      pfam13499
      Location:2 → 42
      EF-hand_7; EF-hand domain pair

    8. XM_026026891.2 → XP_025882676.1  polcalcin Phl p 7 isoform X2

      UniProtKB/TrEMBL
      A0A0P0X8T0, A0A0P0X8W5, A0A8J8YCR9, A2YNR8, A3BM90, Q0D4L7
      Conserved Domains (2) summary
      cd00051
      Location:24 → 72
      EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...
      pfam13499
      Location:2 → 42
      EF-hand_7; EF-hand domain pair

    9. XM_026026889.2 → XP_025882674.1  polcalcin Phl p 7 isoform X1

      UniProtKB/TrEMBL
      A0A0P0X8W5, Q0D4L7
      Conserved Domains (1) summary
      cd00051
      Location:29 → 77
      EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...

    10. XM_066312164.1 → XP_066168261.1  polcalcin Phl p 7 isoform X2

      UniProtKB/TrEMBL
      A0A0P0X8T0, A0A0P0X8W5, A0A8J8YCR9, A2YNR8, A3BM90, Q0D4L7

    RNA

    1. XR_010742381.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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