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    LOC4337596 metallothionein-like protein 2C [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4337596, updated on 10-Oct-2024

    Summary

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    Gene symbol
    LOC4337596
    Gene description
    metallothionein-like protein 2C
    Locus tag
    OSNPB_050111300
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    MTE; MT2C; OsMT2b; OsMT-I-2c; OsJ_016110
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    Genomic context

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    See LOC4337596 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 5 NC_089039.1 (616228..617195)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (605765..606765)

    Chromosome 5 - NC_089039.1Genomic Context describing neighboring genes Neighboring gene mitochondrial import inner membrane translocase subunit Tim9-like Neighboring gene outer envelope pore protein 16, chloroplastic Neighboring gene uncharacterized LOC107281023 Neighboring gene putative protein phosphatase 2C 46

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    metallothionein-like protein 2C
    Names
    Class I metallothionein-like protein 2C
    LOC_Os05g02070
    P0016H04.13
    metallothionein 2b
    metallothionein 2b-like protein
    metallothionein like protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001402474.1 → NP_001389403.1  metallothionein-like protein 2C

      Status: VALIDATED

      Source sequence(s)
      AU062647, CF336937, GU120354
      UniProtKB/Swiss-Prot
      A2XZL0, A3AZ88, A5JVN2, P93433, Q0DLB2, Q65XV5
      UniProtKB/TrEMBL
      A0A8J8YRT7, B7E2X6, B9FKA9

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089039.1 Reference ASM3414082v1 Primary Assembly

      Range
      616228..617195
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    A3AZ88.1 GenPept UniProtKB/Swiss-Prot:A3AZ88

    Gene LinkOut

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