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    LOC4330512 pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit alpha [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4330512, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4330512
    Gene description
    pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit alpha
    Locus tag
    OSNPB_020714200
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1479_B12.23
    Expression
    Broad expression in flower buds (RPKM 33.8), flowers (RPKM 23.6) and 5 other tissues See more
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    Genomic context

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    See LOC4330512 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    18
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (30095997..30101822, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (29604453..29610143, complement)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene RNA-binding protein 24 Neighboring gene diacylglycerol O-acyltransferase 2D Neighboring gene AT-rich interactive domain-containing protein 5 Neighboring gene uncharacterized LOC4330514

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables 6-phosphofructokinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables diphosphate-fructose-6-phosphate 1-phosphotransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in glycolytic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in photosynthesis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in response to glucose IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit alpha
    Names
    Os02g0714200
    putative diphosphate-fructose-6-phosphate 1-phosphotransferase alpha chain

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      30095997..30101822 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015767206.3 → XP_015622692.1  pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit alpha

      UniProtKB/TrEMBL
      A0A0P0VP02, B8AHL5, B9F2C7, Q69T78, Q6ZFT9
      Conserved Domains (1) summary
      PLN03028
      Location:8 → 617
      PLN03028; pyrophosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
    Nucleotide Protein
    Heading Accession and Version

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