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    LOC4350939 mitochondrial ATP-independent inner membrane protease subunit 1a [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4350939, updated on 1-Aug-2024

    Summary

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    Gene symbol
    LOC4350939
    Gene description
    mitochondrial ATP-independent inner membrane protease subunit 1a
    Locus tag
    OSNPB_110620000
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in flowers (RPKM 8.1), flower buds (RPKM 7.4) and 6 other tissues See more
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    Genomic context

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    Location:
    chromosome: 11
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 11 NC_089045.1 (26117637..26121076, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 11 NC_029266.1 (24165772..24169634, complement)

    Chromosome 11 - NC_089045.1Genomic Context describing neighboring genes Neighboring gene BTB/POZ and MATH domain-containing protein 1-like Neighboring gene BTB/POZ and MATH domain-containing protein 1 Neighboring gene oligouridylate-binding protein 1B Neighboring gene probable non-specific lipid-transfer protein 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables serine-type endopeptidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein processing involved in protein targeting to mitochondrion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in signal peptide processing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of mitochondrial inner membrane peptidase complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    mitochondrial ATP-independent inner membrane protease subunit 1a
    Names
    Os11g0620000
    mitochondrial inner membrane protease subunit 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089045.1 Reference ASM3414082v1 Primary Assembly

      Range
      26117637..26121076 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015759854.3 → XP_015615340.1  mitochondrial ATP-independent inner membrane protease subunit 1a isoform X3

      UniProtKB/TrEMBL
      B8BLL7
      Conserved Domains (2) summary
      cd06530
      Location:43 → 155
      S26_SPase_I; The S26 Type I signal peptidase (SPase; LepB; leader peptidase B; leader peptidase I; EC 3.4.21.89) family members are essential membrane-bound serine proteases that function to cleave the amino-terminal signal peptide extension from proteins that are ...
      TIGR02227
      Location:41 → 156
      sigpep_I_bact; signal peptidase I, bacterial type

    2. XM_066305433.1 → XP_066161530.1  mitochondrial ATP-independent inner membrane protease subunit 1a isoform X1

      UniProtKB/TrEMBL
      B8BLL7, Q2R135

    3. XM_015759853.3 → XP_015615339.1  mitochondrial ATP-independent inner membrane protease subunit 1a isoform X2

      UniProtKB/TrEMBL
      A0A0P0Y4C6, B8BLL7, Q0IRL1
      Conserved Domains (1) summary
      TIGR02227
      Location:41 → 162
      sigpep_I_bact; signal peptidase I, bacterial type
    Nucleotide Protein
    Heading Accession and Version

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