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    LOC4351897 protein MAIN-LIKE 2 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4351897, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC4351897
    Gene description
    protein MAIN-LIKE 2
    Locus tag
    OSNPB_120254400
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in leaves before flowering (RPKM 8.4), roots after flowering (RPKM 8.2) and 6 other tissues See more
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    Genomic context

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    See LOC4351897 in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 12 NC_029267.1 (8670026..8679536, complement)

    Chromosome 12 - NC_029267.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107279643 Neighboring gene uncharacterized LOC107279725 Neighboring gene uncharacterized LOC9272337 Neighboring gene uncharacterized LOC9267260

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029267.1 Chromosome 12 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in meristem development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in meristem maintenance IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein MAIN-LIKE 2
    Names
    Os12g0254400

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029267.1 Reference IRGSP-1.0 Primary Assembly

      Range
      8670026..8679536 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_026021948.1 → XP_025877733.1  protein MAIN-LIKE 2

      Conserved Domains (1) summary
      pfam10536
      Location:53 → 304
      PMD; Plant mobile domain

    2. XM_015764618.2 → XP_015620104.1  protein MAIN-LIKE 2

      Conserved Domains (1) summary
      pfam10536
      Location:53 → 304
      PMD; Plant mobile domain

    RNA

    1. XR_003239915.1 RNA Sequence

    2. XR_003239919.1 RNA Sequence

    3. XR_003239918.1 RNA Sequence

    4. XR_003239917.1 RNA Sequence

    5. XR_003239914.1 RNA Sequence

    6. XR_003239920.1 RNA Sequence

    7. XR_003239916.1 RNA Sequence

    8. XR_001542166.2 RNA Sequence

    9. XR_001542175.2 RNA Sequence

    10. XR_001542174.2 RNA Sequence

    11. XR_001542172.2 RNA Sequence

    12. XR_001542169.2 RNA Sequence

    13. XR_001542165.2 RNA Sequence

    14. XR_001542178.2 RNA Sequence

    15. XR_001542177.2 RNA Sequence

    16. XR_001542176.2 RNA Sequence

    17. XR_001542168.2 RNA Sequence

    18. XR_001542188.2 RNA Sequence

    19. XR_001542171.2 RNA Sequence

    20. XR_001542187.2 RNA Sequence

    21. XR_001542183.2 RNA Sequence

    22. XR_001542180.2 RNA Sequence

    23. XR_001542179.2 RNA Sequence

    24. XR_001542170.2 RNA Sequence

    25. XR_001542185.2 RNA Sequence

    26. XR_001542182.2 RNA Sequence

    27. XR_001542186.2 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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