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    LOC4338988 CASP-like protein 5B2 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4338988, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4338988
    Gene description
    CASP-like protein 5B2
    Locus tag
    OSNPB_050456500
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OsJ_18787; OsCASPL5B2
    Expression
    Broad expression in flowers (RPKM 18.6), roots before flowering (RPKM 12.4) and 6 other tissues See more
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 5 NC_089039.1 (22538660..22541622)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (22425224..22428246)

    Chromosome 5 - NC_089039.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4338985 Neighboring gene aldo-keto reductase family 4 member C10 Neighboring gene uncharacterized LOC136356719 Neighboring gene uncharacterized LOC112939093 Neighboring gene ultraviolet-B receptor UVR8

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction. Jantasuriyarat C, et al. Plant Physiol, 2005 May. PMID 15888683, Free PMC Article
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    CASP-like protein 5B2
    Names
    LOC_Os05g38250

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001420518.1 → NP_001407447.1  CASP-like protein 5B2

      Status: VALIDATED

      Source sequence(s)
      AK103232, AP014961, CB679741, CI113011
      UniProtKB/Swiss-Prot
      A0A0N7KKW7, B8AYU8, Q0DHM7

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089039.1 Reference ASM3414082v1 Primary Assembly

      Range
      22538660..22541622
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_026025922.2 → XP_025881707.1  CASP-like protein 5B2 isoform X1

      Conserved Domains (1) summary
      pfam04535
      Location:7 → 110
      DUF588; Domain of unknown function (DUF588)

    2. XM_015782497.3 → XP_015637983.1  CASP-like protein 5B2 isoform X2

      Conserved Domains (1) summary
      pfam04535
      Location:7 → 110
      DUF588; Domain of unknown function (DUF588)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q0DHM7.1 GenPept UniProtKB/Swiss-Prot:Q0DHM7

    Gene LinkOut

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