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    LOC4345277 protein phosphatase 1 regulatory inhibitor subunit PPP1R8 homolog [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4345277, updated on 10-Oct-2024

    Summary

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    Gene symbol
    LOC4345277
    Gene description
    protein phosphatase 1 regulatory inhibitor subunit PPP1R8 homolog
    Locus tag
    OSNPB_080326100
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1136_A10.104
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    Genomic context

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    See LOC4345277 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (14388878..14395710, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (14321210..14328136, complement)

    Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC136357543 Neighboring gene uncharacterized LOC107276438 Neighboring gene uncharacterized LOC4345278 Neighboring gene 60S ribosomal protein L7a-1-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables mRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein phosphatase 1 regulatory inhibitor subunit PPP1R8 homolog
    Names
    Nuclear inhibitor of PP1-like
    Os08g0326100
    P0703C03.39
    nuclear inhibitor of protein phosphatase 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

      Range
      14388878..14395710 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_066303624.1 → XP_066159721.1  protein phosphatase 1 regulatory inhibitor subunit PPP1R8 homolog

      UniProtKB/TrEMBL
      A3BRX7, Q8H4Y5

    2. XM_066303623.1 → XP_066159720.1  protein phosphatase 1 regulatory inhibitor subunit PPP1R8 homolog

      UniProtKB/TrEMBL
      A3BRX7, Q8H4Y5
    Nucleotide Protein
    Heading Accession and Version

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