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    LOC4335676 probable metal-nicotianamine transporter YSL6 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4335676, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4335676
    Gene description
    probable metal-nicotianamine transporter YSL6
    Locus tag
    OSNPB_040390500
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    YSL6; osysl6; OsJ_014022
    Expression
    Ubiquitous expression in roots after flowering (RPKM 52.7), leaves before flowering (RPKM 51.8) and 6 other tissues See more
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    Genomic context

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    See LOC4335676 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (19576353..19580928)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (19220804..19225361)

    Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene heavy metal-associated isoprenylated plant protein 7 Neighboring gene U6 spliceosomal RNA Neighboring gene probable metal-nicotianamine transporter YSL5 Neighboring gene 11-beta-hydroxysteroid dehydrogenase 1A

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. OsYSL6 is involved in the detoxification of excess manganese in rice. Sasaki A, et al. Plant Physiol, 2011 Dec. PMID 21969384, Free PMC Article
    2. Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction. Jantasuriyarat C, et al. Plant Physiol, 2005 May. PMID 15888683, Free PMC Article
    3. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables oligopeptide transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable metal-nicotianamine transporter YSL6
    Names
    LOC_Os04g32050
    OSJNBa0055C08.1
    Protein YELLOW STRIPE LIKE 6
    transporter for Mn-nicotianamine complex

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001402351.1 → NP_001389280.1  probable metal-nicotianamine transporter YSL6

      Status: VALIDATED

      Source sequence(s)
      AK066575, CB673394, CI335175, CI563461
      UniProtKB/Swiss-Prot
      A3ATA0, Q25CI0, Q7XRV2
      UniProtKB/TrEMBL
      A2XSU1, G9MB28, Q01LD5

    2. NM_001419260.1 → NP_001406189.1  probable metal-nicotianamine transporter YSL6

      Status: VALIDATED

      Source sequence(s)
      AB673449, AK064828, CI118013, CI331925
      UniProtKB/Swiss-Prot
      A3ATA0, Q25CI0, Q7XRV2
      UniProtKB/TrEMBL
      A2XSU1, G9MB28, Q01LD5

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

      Range
      19576353..19580928
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q7XRV2.1 GenPept UniProtKB/Swiss-Prot:Q7XRV2

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