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    LOC4351017 nicotianamine aminotransferase 1-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4351017, updated on 10-Oct-2024

    Summary

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    Gene symbol
    LOC4351017
    Gene description
    nicotianamine aminotransferase 1-like
    Locus tag
    OSNPB_110644800
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4351017 in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 11 NC_089045.1 (27548843..27554929, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 11 NC_029266.1 (25596437..25602453, complement)

    Chromosome 11 - NC_089045.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4351015 Neighboring gene dirigent protein 1 Neighboring gene uncharacterized LOC112936872 Neighboring gene uncharacterized LOC4351019

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables L-tyrosine-2-oxoglutarate transaminase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables pyridoxal phosphate binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in tyrosine catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    nicotianamine aminotransferase 1-like
    Names
    Os11g0644800
    probable aminotransferase TAT2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089045.1 Reference ASM3414082v1 Primary Assembly

      Range
      27548843..27554929 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015759728.3 → XP_015615214.1  nicotianamine aminotransferase 1-like isoform X2

      UniProtKB/TrEMBL
      B8B2N0, G4LTZ2
      Conserved Domains (1) summary
      TIGR01265
      Location:70 → 442
      tyr_nico_aTase; tyrosine/nicotianamine family aminotransferase

    2. XM_066305495.1 → XP_066161592.1  nicotianamine aminotransferase 1-like isoform X1

    Nucleotide Protein
    Heading Accession and Version

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