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    LOC4344235 potassium transporter 7-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4344235, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4344235
    Gene description
    potassium transporter 7-like
    Locus tag
    OSNPB_070669650
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    HAK7; OsHAK7
    Expression
    Broad expression in roots before flowering (RPKM 194.7), leaves before flowering (RPKM 73.2) and 6 other tissues See more
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    Genomic context

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    See LOC4344235 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (28539934..28545486, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (28312166..28317763, complement)

    Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene ethylene-responsive transcription factor FZP-like Neighboring gene uncharacterized LOC4344234 Neighboring gene Cysteine-tryptophan domain-containing zinc finger protein 7 Neighboring gene pentatricopeptide repeat-containing protein At4g32430, mitochondrial

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Inventory and functional characterization of the HAK potassium transporters of rice. Bañuelos MA, et al. Plant Physiol, 2002 Oct. PMID 12376644, Free PMC Article
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables potassium ion transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in potassium ion transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    potassium transporter 7
    Names
    LOC_Os07g47350
    Os07g0669650
    P0625E02.129
    putative potasium transporter
    putative potassium transporter

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001403247.1 → NP_001390176.1  potassium transporter 7 isoform 1

      Status: VALIDATED

      Source sequence(s)
      AJ427971, AK059797, AK100652, CA756222, CI003469
      UniProtKB/TrEMBL
      A2YPS3, B9FUS8

    2. NM_001403248.1 → NP_001390177.1  potassium transporter 7 isoform 2

      Status: VALIDATED

      Source sequence(s)
      AJ427971, AK059797, AP014963, CF308749
      UniProtKB/Swiss-Prot
      Q0D3S0, Q8H3P9, Q8VWK2
      UniProtKB/TrEMBL
      B9FUS8

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

      Range
      28539934..28545486 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8H3P9.3 GenPept UniProtKB/Swiss-Prot:Q8H3P9

    Gene LinkOut

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