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    LOC4329544 zinc finger A20 and AN1 domain-containing stress-associated protein 5-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4329544, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4329544
    Gene description
    zinc finger A20 and AN1 domain-containing stress-associated protein 5-like
    Locus tag
    OSNPB_020530300
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    SAP5; OsSAP5; OsJ_06995
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    Genomic context

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    See LOC4329544 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (19966087..19966849)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (19488116..19488950)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene copper transport protein ATX1 Neighboring gene uncharacterized LOC107279893 Neighboring gene protein LITTLE ZIPPER 4 Neighboring gene poly [ADP-ribose] polymerase 3-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    zinc finger A20 and AN1 domain-containing stress-associated protein 5
    Names
    LOC_Os02g32840
    P0476H10.31
    putative multiple stress-responsive zinc-finger protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001416637.1 → NP_001403566.1  zinc finger A20 and AN1 domain-containing stress-associated protein 5

      Status: VALIDATED

      Source sequence(s)
      CI265023, CI307802
      UniProtKB/Swiss-Prot
      A3A7L0, Q6H754
      UniProtKB/TrEMBL
      A2X5L2

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      19966087..19966849
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      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q6H754.1 GenPept UniProtKB/Swiss-Prot:Q6H754

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