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    LOC9268417 clathrin interactor EPSIN 2 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 9268417, updated on 1-Aug-2024

    Summary

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    Gene symbol
    LOC9268417
    Gene description
    clathrin interactor EPSIN 2
    Locus tag
    OSNPB_020806600
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    epsin-like; OJ1111_C07.17-1; OJ1111_C07.17-2
    Expression
    Ubiquitous expression in flowers (RPKM 64.2), roots before flowering (RPKM 61.2) and 6 other tissues See more
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (34925276..34930816, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (34428659..34434220, complement)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene GATA transcription factor 11 Neighboring gene uncharacterized LOC9272519 Neighboring gene E3 ubiquitin-protein ligase WAV3 Neighboring gene long chain base biosynthesis protein 1b-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables clathrin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables phospholipid binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in endocytosis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of clathrin vesicle coat IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in endosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    clathrin interactor EPSIN 2
    Names
    Os02g0806600
    putative epsin 2a

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      34925276..34930816 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015769684.3 → XP_015625170.1  clathrin interactor EPSIN 2

      UniProtKB/TrEMBL
      A2XAR9, A3ACG9, C7IYF8, Q6K8F1, Q948G6
      Conserved Domains (3) summary
      PHA03247
      Location:322 → 754
      PHA03247; large tegument protein UL36; Provisional
      TIGR01642
      Location:177 → 395
      U2AF_lg; U2 snRNP auxilliary factor, large subunit, splicing factor
      cd03571
      Location:26 → 142
      ENTH; Epsin N-Terminal Homology (ENTH) domain family

    2. XM_066308070.1 → XP_066164167.1  clathrin interactor EPSIN 2

      UniProtKB/TrEMBL
      A2XAR9, A3ACG9, C7IYF8, Q6K8F1, Q948G6
    Nucleotide Protein
    Heading Accession and Version

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